Cloning, as it applies to fix wordpress malware cleanup, is the act of making an exact replica of your WordPress install. What is good is that with the correct software, you can do it. There are a number of reasons why you might want to do this. Here are only a few.
Hackers don't have the power to come to your WordPress blog once you got these lined up for your security. You can have a safe WordPress account especially that one which gives big bucks from affiliate marketing to you.
Exclude pages - This plugin provides a checkbox,"include this page in menus", which is checked by default. If you uncheck it, the page will not appear in any listings of pages (which includes, and is ordinarily limited to, your page navigation menus).
Black and pathological-looking phrases that were whitelists based on which field they look inside, in a page request. click resources (unknown/numeric parameters vs. known post bodies, remark bodies, etc.).
Those are three simple things you can do to maintain WordPress safe without plugins. Put a blank Index.html file in your folders, run your web host security scan and backup your whole account.